Screening Against All Published Protein ChIP-Seq Libaries

Pairwise Comparisons of the epigenome profile between the query and 616 proteins from 1,566 protein ChIP-seq libraries, to identify putative protein partners or functionally associated protein pairs.
Output consists of (1) Scatter plots of Mutual information (MI) / KLD and percent overlap (2) Comparison table.
Lower score of KLD and higher score of Mutual information (MI) suggest functional consistency.
In contrast, higher score of KLD and lower score of Mutual information (MI) suggest functional opposite.
Refer to Pairwise Comparison of Protein ChIP Libaries for known protein partners.

Name of the input query

Input genomic regions OR list of Gene IDs OR list of transposable element (TE) IDs
[Load Demo BED] [Load Demo Genes] [Load Demo TEs] [Clear]

Or upload BED file (for genomic regions) / TXT file (for Gene IDs and TE IDs):
Filename Extension: .narrowPeak, .bed, .txt, file size limit: 1 MB, file name limit 25 char

Limit genomic regions on genes or TEs

No limit

Genes

TEs

Advanced options for SVM model

SVM model for predicting epigenome profile

All Genomic Regions (Without H3) [default]

All Genomic Regions

Critical Regions (Without H3)

Critical Regions